PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21986.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 266aa    MW: 30870.5 Da    PI: 6.1019
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21986.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.4e-17855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed +lv  v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
       KHN21986.1  8 RGPWTEQEDYKLVYFVNMFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55
                     89********************************************97 PP

2Myb_DNA-binding52.61e-1661106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++E+ l  d++ ++G++ W++Iar+++ gRt++++k++w++++
       KHN21986.1  61 RGKLTPQEEHLVMDLHSKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 106
                      7999******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.76355IPR017930Myb domain
SuperFamilySSF466891.61E-295102IPR009057Homeodomain-like
SMARTSM007173.8E-15757IPR001005SANT/Myb domain
PfamPF002493.1E-15855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-21961IPR009057Homeodomain-like
CDDcd001671.57E-101055No hitNo description
PROSITE profilePS5129427.03656110IPR017930Myb domain
SMARTSM007171.6E-1360108IPR001005SANT/Myb domain
PfamPF002495.1E-1561105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2462109IPR009057Homeodomain-like
CDDcd001673.50E-965106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVQQEIRRGP WTEQEDYKLV YFVNMFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPDLK  60
RGKLTPQEEH LVMDLHSKWG NRWSRIARRL PGRTDNEIKN YWRTHMRKKK AQEKKHASAA  120
SPVSSSCQSS LSSNNHVVDS HASKEVGEES CYDTGGYDDG MMMGLIGGEK GYSMDDIWKD  180
IMSEEENNIY NNNLQPVYEG HSEEGCNFSC PPPPMIMPSP PSWDQYNISS QPLWVMDEEE  240
SNKMLFPTLS DQYFPYYEQG NAFLTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2851091104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0972740.0BT097274.1 Soybean clone JCVI-FLGm-21F20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538016.10.0PREDICTED: transcription factor MYB59-like
SwissprotQ4JL842e-77MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A0R0HH720.0A0A0R0HH72_SOYBN; Uncharacterized protein
TrEMBLA0A0B2QKN00.0A0A0B2QKN0_GLYSO; Transcription factor MYB59
STRINGGLYMA11G15180.61e-165(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-72myb domain protein 59
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]